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Anticancer natural products from Aspergillus neoniger, an endophyte of Ficus carica
Bulletin of the National Research Centre volume 45, Article number: 74 (2021)
Several plants have not been investigated for their endophytes, such as the medicinal plant Ficus carica for which anticancer activity has been confirmed. The endophyte Aspergillus neoniger was selected for investigation of its metabolites since it exerted anticancer activities in preliminary screening assays.
Bioactivity-guided chromatographic fractionation was performed on the endophytic extract and resulted in the identification of asperazine and asperazine A through spectroscopic analysis. Moderate cytotoxicity against HeLa cell lines (CC50 = 18.4 µg mL−1) and moderate antiproliferative effects against HUVEC and K-562 cell lines (GI50 = 31.5 and 24.8 µg mL−1, respectively) were observed for asperazine. Asperazine A on the other hand showed weak cytotoxic activity against HeLa cell lines (CC50 = 34.6 µg mL−1) as well as weak cytostatic activities against HUVEC and K-562 cell lines (GI50 = 40.7 and 50.2 µg mL−1, respectively) while no antimicrobial activity was detected for both compounds.
These results suggest contribution of A. neoniger to the reported anticancer activity of the host plant and provides a new source of anticancer metabolites with therapeutic potential.
Fungi play several important ecological roles. As parasites and pathogens, they often attack many organisms such as animals, humans, plants, and even other fungi. As saprotrophic fungi they play a vital role in the cycling of nutrients (Verma et al. 2009). Endophytes are defined as microorganisms inhabiting plant tissues without causing any diseases (Tan and Zou 2001) and provide an important source of biologically active natural products (Berdy 2005) many of which represent promising sources of anticancer drugs (Aly et al. 2008). It has been recommended to choose a plant exerting biological activities and growing in special environments for the study of its endophytes (Strobel 2006). Therefore, Ficus carica for which a wide range of biological activities has been reported was chosen to explore its endophytes. In folk medicine, this plant was found to improve several disorders such as cardiovascular, gastrointestinal, respiratory disorders and ulcerative diseases (Vieira and Kijjoa 2005). It was employed in folk medicine as an antibacterial, antidiabetic and hypotensive agent. The extract of Ficus carica was reported to exert cancer suppressive and antiviral effects (Herre et al. 2008; Joseph and Raj 2011). A recent study on endophytes of F. carica growing in India examined their possible administration as biocontrol agents (Rosli et al. 2020; Kour 2020). Antimicrobial activity against several bacterial strains was reported for Ficus carica extract (MIC = 0.313–5 mg/mL) (Joeng et al. 2009) as well as antifungal effects against C. albicans (MIC = 500 μg/mL) and Microsporum canis (MIC = 75 μg/mL) (Aref 2010). Furthermore, antitumor activity was also confirmed against Huh7it liver cancer cells for the plant extract (IC50 f > 653 μg/mL) (Purnamasari 2019a, b). Taking the reported activities of the plant and the tropical growth conditions in Makkah, Saudi Arabia in consideration, F. carica was chosen for investigation of its endophytes. We investigated whether its bioactive endophyte A. neoniger contributes to the plant’s reported antimicrobial and anticancer activities. Aspergillus is considered as a rich source of natural products (Samson 2014; Matsunaga 2021) with a wide range of biological effects (Inglis et al. 2013). Several compounds with useful medicinal effects were obtained from it such as geldanamycin which acts as an antitumoral agent, plakortide which exhibits antiparasitic action, spinosyn which exerts insecticidal effects and lovastatin which reduces cholesterol levels (Sanchez 2012; Bok 2009; Benny 2008).
Collection of the plant and isolation of the endophyte
Plant collection was carried out from Wadi Fatima, Makkah, Saudi Arabia and Dr. Hany Gouda conducted its identification. The plant was kept as a voucher specimen (UQU-2019–1) at the herbarium of the Faculty of Pharmacy, Umm Al-Qura University. The plant material was first cut into small pieces, sterilized, and dried under a laminar flow hood. Outer tissues were removed, and inner tissues dissected and planted onto malt agar (MA) plates containing 0.1 g streptomycin as an antibiotic. Plates were incubated at room temperature for one month followed by bringing hyphal tips into fresh malt agar medium. Duplicate plates were prepared to eliminate the possibility of contamination and repeated inoculation was carried out to isolate the pure strain. Chloramphenicol (0.2 g) or streptomycin or (0.1 g) were added to inhibit bacterial growth during fungal isolation (Zhang et al. 2006).
Identification of the fungal strain
By using the standard protocol based on the cultural and microscopical properties of the isolated fungal strain its identification was performed (Barnett and Hunter 1998) and was re-confirmed by the Microloge system (Biolog, Inc., Hayward, CA) at the National Research Central Lab., GSFMO, Saudi Arabia (Grizzle and Zak 2006).
Fermentation, extraction and fractionation of the endophyte
The isolated fungus was cultivated for two weeks on potato dextrose agar (PDA) at 23 °C. The mycelium of each plate was used to inoculate a 1L Erlenmeyer flask containing 250 mL of the MPG-medium which consisted of soybean flour (2 g/L), glucose (10 g/L), yeast extract (1 g/L), malt extract (20 g/L), KH2PO4 (1 g/L) and MgSO4·7H2O (0.5 g/L). A 60 L stationary culture was incubation for three weeks (23 °C) under static conditions. Afterwards, the culture filtrate and mycelium were homogenized, then macerated for 24 h in 200 mL ethyl acetate and finally decanted. The extract obtained was evaporated to dryness and defatted with n-hexane. Fractionation of the defatted extract was performed on Silica gel using chloroform and methanol (9:1), followed by fractionation on Sephadex LH-20 using methanol as an eluent and finally purifying the bioactive natural products using preparative HPLC by elution with 25% acetonitrile in H2O. This resulted in the isolation of asperazine (5 mg) and asperazine A (5.5 mg).
Human immortal cervical cancer cells (HeLa), Human umbilical vein endothelial cells (HUVEC) and human immortalized myelogenous leukemia cells (K-562) were cultured in Roswell Park Memorial Institute medium (RPMI 1640), Dulbecco's Modified Eagle's Medium (DMEM) and RPMI 1640 medium, respectively. The cell culture medium was provided with 500 µL L−1 gentamicin sulfate, 10 mL L−1 ultraglutamine 1 and 10% heat-inactivated fetal bovine serum at 37 °C in high-density polyethylene flasks. The anticancer assay was performed and evaluated as previously described in the literature (Abdou 2010; Macabeo 2013). The concentration for 50% of maximal inhibition of cell proliferation (GI50) and the 50% cytotoxic concentration (CC50) of the investigated samples were calculated by determining the intersection of the dose response curve with the 50% line, compared to untreated control. The obtained values were compared using Magellan software (TECAN).
Isolation of bioactive endophytic secondary metabolites
The extract of the strain cultivated in MPG medium showed potent cytotoxic effects against HeLa (CC50 = 6.2 µg mL−1) in addition to antiproliferative effects against K-562 and HUVEC cell lines (GI50 = 5.9 and 4.8 µg mL−1 respectively). Column chromatographic fractionation of the defatted methanolic extract started on Silica gel using chloroform and methanol (9:1) as a solvent mixture followed by gradual increase of polarity till elution with 100% methanol. Fractions of similar chromatographic properties were combined, and final fractions obtained were assayed for anticancer activity. Active fractions were purified using Sephadex LH-20. Final purification was performed on preparative column chromatography using 25% acetonitrile in water on reversed phase silica as a stationary phase.
Structure elucidation of bioactive metabolites
The first secondary metabolite obtained appeared as white powder and a molecular formula of C40H37N6O4 has been indicated for it by HRESIMS and a molecular weight of m/z 665.3190 [M + H]+ calcd, 665.3193. The 1H NMR spectrum revealed the presence of five aromatic proton signals corresponding to protons H-19–H-23 and their aromatic carbons C-19–C-23 were detected in the 13C NMR and DEPT spectra as well, thus indicating the presence of a substituted aromatic ring. The HMBC spectrum revealed a correlation between the proton at δ 7.05 ppm and the carbon signal at δ 36.6 ppm in addition to a correlation between the proton signal at δ 7.1 ppm and the same carbon signal at δ 36.7 ppm thus confirming connection of this aromatic ring to a methylene group at δ 36.7 ppm. Accordingly, the first part of the structure of this natural product was revealed to be a phenyl alanyl group.
Furthermore, four methine carbons of another aromatic ring (C-5–C-8) were in the 13C NMR and DEPT spectra as well as four corresponding aromatic protons (H-5–H-8), thus representing a disubstituted aromatic ring.
HMBC correlations indicated that the substituted carbons of this aromatic ring are the quaternary carbons at δ 148.5 ppm (C-9) and 134.1 ppm (C-4) which are connected to an olefinic quaternary carbon at δ 59.2 ppm (C-3) that is correlated in HMBC with H-6 at δ 6.50 ppm. The connection of a heteroatom to the quaternary carbon at δ 148.5 ppm (C-9) of this aromatic ring was concluded from its high chemical shift. These NMR data led to the deduction of a tryptophan subunit for the structure of this natural product. The quaternary carbon at δ 59.2 ppm (C-3) is correlated with the protons attached to C-12 (δ 3.24 and 2.41 ppm) which is itself connected to the aromatic ring moiety containing the aromatic quaternary carbon (C-24) at δ 126.2 ppm.
From these correlations, it was concluded that this aromatic ring belonged to a second tryptophan unit of the structure. This was confirmed by HMBC correlations (Fig. 2) observed for H-27 at δ 7.51 ppm to the quaternary carbon C-32 at δ 108.8 ppm, the high chemical shift of C-29 (δ 135.4 ppm) supporting its connection to an imine group, as well as the correlation of the methylene protons H-33 at δ 3.04 and 3.08 ppm with C-29 (δ 135.4 ppm). By comparison of the structure suggested in Fig. 1 for the compound and its NMR data (Additional file 1: Table S1) with literature its identity was confirmed as asperazine, the diketopiperazine dimer previously isolated from A. niger obtained from a Caribbean sponge (Varoglu 1997).
Analysis of the NMR data of the second metabolite isolated from A. neoniger endophyte revealed it to be a homologue of asperazine (1) with the same molecular weight (HRESIMS, m/z 665.3190 [M + H]+ calcd 665.3193) and molecular formula (C40H37N6O4). The main differences between the two metabolites were the observed higher chemical shift of C-3 at δ 72.6 ppm indicating its attachment to a nitrogen atom and the lower chemical shift of C-24 at δ 111.3 ppm. Additionally, the DEPT spectrum revealed C-24 to be a primary carbon, while it is a quaternary carbon in compound 1. Accordingly, a connection of the two subunits of the structure elucidated for (1) through a C-N bond from C-3 to the inolic nitrogen was concluded for the dimer of compound (2). The suggested structure for 2 was confirmed by HMBC correlations (Fig. 2) observed from the methylenic protons (H-12) to C-11, C-13, C-28, and C-29 in addition to correlations observed from H-31 to C-3, C-28, and C-29. These data led to the deduction of the structure of asperazine A presented in Fig. 3 for this compound which was matching with previously reported literature data of the compound (Lia 2015).
Asperazine was previously isolated from Aspergillus tubingensis as a marine microbial metabolite and was found to exert cytotoxic activity against leukemia cells but showed no antimicrobial action (Ovenden 2004). Our assay revealed moderate cytotoxicity of asperazine against the human immortal cervical cancer cell line (HeLa) (Fig. 3) and moderate cytostatic activity against human umbilical vein endothelial cells (HUVEC) and human immortalized myelogenous leukemia cells (K-562). A value of 19.2 µg mL−1 was obtained for the CC50 of asperazine against HeLa cell line and GI50 values of 31.4 and 24.6 µg mL−1 against HUVEC and K-562 cell lines, respectively (Figs. 4, 5). In a reported study analysis of extracts of 140 A. niger, 177 A. tubingensis, one A. vadensis and 47 Aspergillus acidus strains revealed production of asperazine only by A. acidus and A. tubingensis (Nielsen 1999). The rather limited biosynthesis of this secondary metabolite by Aspergillus species led to its consideration as a marker for differentiation of severely toxic Aspergillus niger species from the less toxic A. acidus and A. tubingensis species (Nielsen 1999).
Asperazine A also exerted moderate cytotoxic activity against HeLa cell lines by exhibiting a CC50 value of 34.4 µg mL−1 and weak cytostatic activities against HUVEC and K-562 cell lines with GI50 values of 40.5 and 50 µg mL−1 (Figs. 3, 4, 5), while no antimicrobial activity was detected for both compounds in the conducted agar diffusion assay.
Recently, a study reported the detection of asperazine A in an endophytic A. niger strain of the liverwort Heteroscyphus tener. It was found to exert weak cytotoxicity against the cancer cell lines PC3, A2780, K562, MBA-MD-231, and NCI-H1688 (Lia 2015). Since the anticancer activity of asperazine is higher than that of its homologue asperazine A, the connection of the two subunits of this diketopiperazine dimer through the C-N bond from C-3 to the inolic nitrogen seems to reduce its biological activity.
In conclusion an A. neoniger strain has been isolated from the medicinal plant F. carica and tested for anticancer activity in an attempt of finding out if it contributes to the anticancer activity reported for the host plant. Two natural products, asperazine and asperazine A were isolated as bioactive fungal metabolites which supports the assumption that this endophyte contributes to the host plant’s anticancer activity. The cytotoxic and antiproliferative effects of asperazine against HeLa, HUVEC, and K-562 are higher than those of asperazine A indicating the importance of the C-N bond connecting the two subunits of the diketopiperazine dimer for the biological activity.
Availability of data and materials
All data and material are available upon request.
Minimum inhibitory concentration
- CC50 :
Cytotoxic concentration 50
- GI50 :
Growth inhibition 50%
Heteronuclear multiple bond correlations
Nuclear magnetic resonance
Human umbilical vein endothelial cell
High-resolution electrospray ionization mass spectrometry
Grain silos and flour milling organization
Malt potato glucose medium
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The authors would like to thank the Deanship of Scientific Research at Umm Al-Qura University for funding this study through a Grant Coded: 19-MED-1-03-0005.
This work has been fully supported and funded by a Grant code 19-MED-1-03-0005 from the Deanship of Scientific Research at Umm Al-Qura University which provided all required materials, basic supplies, manpower and analysis.
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Abdou, R., Alqahtani, A.M. & Attia, G.H. Anticancer natural products from Aspergillus neoniger, an endophyte of Ficus carica. Bull Natl Res Cent 45, 74 (2021). https://doi.org/10.1186/s42269-021-00536-8
- Asperazine A
- Aspergillus neoniger
- Ficus carica