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Bulletin of the National Research Centre
Fig. 2 | Bulletin of the National Research Centre

Fig. 2

From: Identification of consensus hairpin loop structure among the negative sense subgenomic RNAs of SARS-CoV-2

Fig. 2

Secondary structure of consensus sequence of respective negative sense subgenomic RNAs. The secondary structure of each sequence was predicted by using Vienna RNA webserver. The respective portion of hairpin loop is shown with probability in color coding from 0 to 1. Secondary structure of consensus alignment sequence of each subgenomic RNA is shown in panel A and B. Panel A involves consensus secondary structure from subgenomic RNAs those have been detected or mapped at considerable level through NGS reads mapping (Alexandersen et al. 2020). Panel B involves consensus structure of subgenomic RNAs those have been detected at very low or zero level through NGS reads mapping. The complete secondary structure of each subgenomic RNA is provided in supplementary data file

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