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Table 5 ResFinder results for resistance genes of Klebsiella pneumoniae

From: Antibiogram profile prediction of selected bacterial strains by in silico determination of acquired antimicrobial resistance genes from their whole-genome sequence

Species

Strain

Resistance genes

Accession number

Percentage identity (%)

ResFinder predicted phenotype

K. pneumoniae

184468

OqXA

EUB70913

99.23

CHL, NAL, CPR, TRI

dfrA1

X00926

100.00

TRI

dfrA12

AM040708

100.00

TRI

sul1

U12338

100.00

SMO

sul2

AY034138

100.00

SMO

OqXB

EU370913

98.79

CHL, NAL, CPR, TRI

aac(3)-lld

EU022314

99.88

APR, GEN

aadA1

JX185132

99.75

TOB, SPE, STP

armA

AY220558

100.00

AMI, GEN, TOB, ISE

aac(6′)-lb-cr

DQ303918

100.00

CPR

aadA2

JQ364967

100.00

SPE, STP

aph(6)-ld

CP000971

100.00

STP

aph(3′)-VI

KC170992

100.00

AMK

fosA

ACWO01000079

99.29

FOS

mph(E)

DQ839391

99.89

ERY

ere(A)

FN396877

100.00

ERY

msr(E)

FR151518

100.00

ERY, AZT

AAR-2

HQ141279

100.00

RFP

blaSHV-56

EU586041

99.54

AMX, AMP, AMXC, AMPC

blaSHV-89

DQ193536

99.54

AMX, AMP, CEP

blaSHV-76

AM176551

99.54

AMX, AMP, CEP

blaCTX-M-15

AY044436

100.00

AMX, AMP, CEF, CFT, CFZ

  1. CHL Chloramphenicol, NAL Nalidixic acid, CPR Ciprofloxacin, TMP Trimethoprim, SMO Sulfamethoxazole, APR Apramycin, GEN Gentamycin, TOB Tobramycin, SPE Spectinomycin, STP Streptomycin, AMK Amikacin, FOS Fosfomycin, ISE Isepamicin, ERY Erythromycin, AZT Azithromycin, RFP Rifampicin, AMX Amoxicillin, AMXC Amoxicillin + Clavulanic acid, AMP Ampicillin, AMPC Ampicillin + clavulanic acid, CEP Cephalotin, CEF Cefepime, CFT Cefotaxim, CFZ Ceftazidime