Antibiogram profile prediction of selected bacterial strains by in silico determination of acquired antimicrobial resistance genes from their whole-genome sequence

Bulletin of the National Research Centre

Table 3 ResFinder results for resistance genes of 2 strains of Pseudomonas aeruginosa

S/N	Species	Strain	Resistance genes	Accession number	Percentage identity (%)	ResFinder predicted phenotype
1	P. aeruginosa	PAO1	fosA	ACWU01000146	99.51	FOS
			catB7	AFO36933	100.00	CHL
			bla_PAO	FJ666065	100.00	AMX, AMP, CEF, CFZ
2	P. aeruginosa	NCTC 10332	fosA	ACWU01000146	99.26	FOS
			catB7	AFO36933	98.75	CHL
			bla_PAO	AY08595	99.58	AMX, AMP, CEF, CFZ
			bla_OXA-396	AY306134	99.75	AMX, AMP, MER
			bla_OXA-494	AY597430	99.75	UBL
			bla_OXA-50	AY306130	99.75	AMX, AMP

FOS Fosfomycin, CHL Chloramphenicol, AMX Amoxicillin, AMP Ampicillin, CEF Cefepime, CFZ Ceftzidime, MER Meropenem, UBL Unknown beta-lactam