Table 4 Single-nucleotide polymorphisms in spliced and Intron-retained sequences of Egyptian buffalo CATH4 mRNA and their distances from GT splice site

Exon 1(c.1–198)

c.25 T/G(K)

C

173

c.26 T/C(Y)

T

172

c.44 T/C(Y)

T

154

c.84 T/C(Y)

C

114

c.108G/A(R)

G

90

c.147C/T(Y)

C

51

c.176A

c. 176 T/A(W)

22

c.183A/C(M)

C

15

c.186G/A (R)

c. 186 A/G(R)

12

c.191C

c. 191 T/C(Y)

7

Retained intron 1

–

c.198+21 C/T(Y)

18

Exon 2 (c.199–306)

c276C/T(Y)

c.276 T/C(Y)

30

c277A/G(R)

c.277 G/A(R)

29

c284G/A(R)

c. 284A/G(R)4

22

Retained intron 2

–

c.306+32 T/C(Y)

29

–

c.306+60 A/T(W)

57

Exon 3 (307-378)

c.315G/ A (R)

c.315 G/A(R)

63

c.377A

c.377 C/A(M)

1

Retained intron 3

–

c.378+94 G/C(S)

91

–

c.378+249 T/A(W)

246