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Table 2 List of AB1 microcosm sequences annotated for carbohydrate-active enzymes (CAZy) and their taxonomic affiliations

From: Detection of carbohydrate-active enzymes and genes in a spent engine oil-perturbed agricultural soil

Sequence ID Microorganisms CAZy Family/enzymes
NODE_6017_length_143_cov_1.160839_1_211_- Sphingobium yanoikuyae AA3
GMC family oxidoreductase
NODE_2589_length_175_cov_1.097143_1_243_- Burkholderia cenocepacia AA3
GMC family oxidoreductase
NODE_5399_length_154_cov_2.253247_1_222_- Pseudomonas sp. LFM046 AA3
GMC family oxidoreductase
NODE_5122_length_210_cov_1.723809_1_278_- Myxococcus fulvus AA5
Galactose oxidase; N-acetylneuraminic acid mutarotase
NODE_6741_length_192_cov_2.000000_17_260_- Dyella jiangningensis AA5
Cell envelope biogenesis protein OmpA
NODE_6279_length_159_cov_10.132075_17_227_- Stenotrophomonas panacihumi AA6
RidA family protein
NODE_5545_length_215_cov_3.297674_1_283_- Burkholderia multivorans AA6
NAD(P)H-dependent oxidoreductases
NODE_846_length_148_cov_3.243243_1_215_+ Burkholderia cenocepacia CBM13
Fe-S protein assembly chaperone HscA
NODE_2953_length_216_cov_2.287037_1_284_- Luteibacter sp. 329MFSha CBM2
Polyisoprenoid binding protein Yce1
NODE_2277_length_196_cov_2.520408_1_263_+ Terriglobus saanensis SP1PR4 CBM32|GH64
β-Galactosidase/β-glucuronidase
NODE_6409_length_192_cov_1.015625_1_260_- Pseudomonas aeruginosa M18, Pseudomonas aeruginosa PAO1, Pseudomonas aeruginosa DK2, Pseudomonas aeruginosa LESB58, Pseudomonas aeruginosa UCBPP-PA14, Pseudomonas aeruginosa NCGM2.S1, Pseudomonas aeruginosa PA7, Pseudomonas aeruginosa B136–33 CBM48|GH13
Glycogen debranching enzyme, Glgx
NODE_1616_length_151_cov_5.688742_1_219_- Desulfobacteriales bacterium S3730MH5, Desulfurivibrio alkaliphilus AHT2 CBM48|GH13
Glycogen debranching enzyme, Glgx
NODE_4632_length_223_cov_1.408072_1_291_- Methylocella silvestris BL2 CBM48|GH13
Glycogen debranching enzyme, Glgx
NODE_5593_length_203_cov_1.793103_1_271_- Zymobacter palmae CBM50
N-Acetylmuramoyl-l-alanine amidase
NODE_5996_length_211_cov_1.436019_1_278_+ Massilia sp. WF1 CBM50
Bifunctional metallophosphatase/5′-nucleotidase
NODE_3645_length_144_cov_1.305556_1_212_+ Ralstonia sp. 25mfcol4.1 CBM50
Bifunctional metallophosphatase/5′-nucleotidase
NODE_6551_length_305_cov_1.183607_1_373_- Terriglobus sp. TAA 43 CBM6
Trehalose utilization; bacterial ThuA like proteins
NODE_2354_length_166_cov_1.963855_1_234_- Caulobacter crescentus CB15 CE10
S9 family peptidase
NODE_1193_length_268_cov_1.029851_1_336_- Pseudomonas sp. ATCC 13867 CE10
Alpha/beta hydrolase
NODE_782_length_156_cov_4.596154_1_224_- Sphingomonas sanxanigenens CE4
Polysaccharide deacetylase
NODE_7975_length_185_cov_1.070270_1_253_- Edaphobacter aggregans CE9
N-Acetylglucosamine-6-phosphate deacetylase
NODE_5120_length_169_cov_1.633136_1_237_- Enterobacter cloacae complex sp. GN02208 GH1
Mannose-6-phosphate isomerase
NODE_3720_length_211_cov_1.113744_1_279_- Pseudomonas jinjuensis GH1
Polysaccharide biosynthesis protein
NODE_784_length_167_cov_6.101797_1_234_+ Candidate division NC10 bacterium GH1
Glucokinase
NODE_5198_length_149_cov_1.000000_1_217_+ Pseudomonas sp. ATCC 13867 GH1
Polysaccharide biosynthesis protein
NODE_3278_length_268_cov_1.171642_1_336_- Pseudomonas sp. ATCC 13867 GH1
dTDP-4-dehydrorhamnose reductase
NODE_5480_length_258_cov_1.608527_1_326_+ Verrucomicrobia bacterium TMED102 GH1
UDP-glucose-4-epimerase
NODE_4670_length_180_cov_13.094444_1_248_- Pseudomonas nitroreducens GH1
Polysaccharide biosynthesis protein
NODE_5370_length_265_cov_1.532076_1_333_- Novosphingobium panipatense GH10
Endo-1,4-beta-xylanase
NODE_1568_length_228_cov_1.947368_1_296_+ Sphingobium yanoikuyae GH102
Membrane-bound lytic murein transglycosylase A (Mlt A)
NODE_6766_length_185_cov_1.437838_1_253_- Acidobacterium capsulatum ATCC 51196 GH13
α-Amylase; maltose α-d-glucosyltransferase
NODE_5915_length_232_cov_1.948276_1_300_- Pseudomonas aeruginosa M18, Pseudomonas aeruginosa DK2, Pseudomonas aeruginosa B136–33, Pseudomonas aeruginosa PAO1, Pseudomonas aeruginosa NCGM2.S1, Pseudomonas aeruginosa LESB58 GH13
Maltose α-d-glucosyltransferase, trehalose synthase, α-amylase
NODE_5876_length_208_cov_1.855769_1_276_- Klebsiella pneumoniae NTUH-K2044, Klebsiella pneumoniae subsp. pneumoniae 1084, Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ATCC 700721, Klebsiella pneumoniae, Klebsiella pneumoniae KCTC 2242 GH13|CBM34
Maltodextrin glucosidase
NODE_7762_length_298_cov_1.144295_1_366_- Klebsiella pneumoniae subsp. pneumoniae HS11286, Klebsiella pneumoniae NTUH-K2044, Klebsiella variicola At-22, Klebsiella pneumoniae subsp. pneumoniae 1084, Klebsiella pneumoniae KCTC 2242, Klebsiella pneumoniae 342 GH23
Transglycosylase, Slt family
NODE_2599_length_298_cov_1.399329_1_366_- Pantoea sp. AS1 GH23
Lytic transglycosylase F
NODE_2200_length_253_cov_7.509881_1_321_- Azoarcus sp. BH72 GH23
Transglycosylase
NODE_5069_length_206_cov_1.009709_1_218_+ Paracoccus alcaliphilus GH23
Transglycosylase SLT domain-containing protein
NODE_662_length_247_cov_1.692308_1_315_+ Sphingobium yanoikuyae GH28
Exo-poly-alpha-d-galacturonosidase
NODE_3908_length_235_cov_2.161702_1_303_- Sphingobium yanoikuyae GH3
β-Glucosidase
NODE_1878_length_262_cov_3.122137_1_330_+ Sphingobium yanoikuyae GH3
β-Glucosidase
NODE_2573_length_202_cov_1.816832_1_270_- Dyella japonica GH3
Serine hydrolase
NODE_8591_length_292_cov_1.068493_1_360_- Dyella jiangningensis GH3
Serine hydrolase
NODE_6030_length_152_cov_3.302632_1_220_- Dyella japonica GH3
Serine hydrolase
NODE_3562_length_235_cov_1.365957_1_303_+ Sphingobium yanoikuyae GH3
β-Glucosidase
NODE_2535_length_220_cov_1.418182_17_288_- Enterobacter cloacae EcWSU1 GH31
α-Glucosidase
NODE_5102_length_288_cov_1.451389_1_356_+ Novosphingobium lindaniclasticum GH32
Sulfoxide reductase heme-binding subunit YedZ
NODE_2470_length_195_cov_1.123077_1_263_- Pseudomonas sp. ATCC 13867 GH33
Dihydrodipicolinate synthase
NODE_3807_length_220_cov_1.659091_1_288_- Pseudomonas spp. GH37
Alpha, alpha-trehalase
NODE_3648_length_147_cov_3.619048_1_214_+ Sphingobium sp. AP50 GH37
Alpha, alpha-trehalase
NODE_6376_length_211_cov_1.677725_1_279_- Sphingobium yanoikuyae GH43
Arylsulfatase
NODE_3174_length_220_cov_1.795455_1_288_- Caulobacter segnis ATCC 21756 GH43
Glycosyl hydrolase
NODE_4474_length_145_cov_2.613793_1_213_- Sphingobium yanoikuyae GH51
Alpha-N-arabinofuranosidase, alpha-l-arabinofuranosidase
NODE_5021_length_187_cov_1.946524_1_255_- Pseudomonas spp. GH53
Diguanylate cyclase
NODE_806_length_180_cov_1.127778_1_248_- Mycobacterium spp. GH63
Glycogen debranching protein
NODE_3706_length_225_cov_1.666667_17_293_- Cupriavidus sp. amp6 GH72
GTP-binding protein YchF
NODE_2527_length_263_cov_1.615970_1_331_- Sphingomonas sp. NFR15 GH78
Alpha-l-rhamnosidase
NODE_5291_length_236_cov_1.822034_1_304_- Acidobacterium capsulatum ATCC 51196 GH79
Chain A, crystal structure of β-glucuronidase
NODE_7967_length_218_cov_2.000000_1_286_- Terriglobus sp. TAA 43 GH8
Endoglucanase
NODE_8032_length_165_cov_1.351515_1_232_+ Terriglobus sp. TAA 43 GH92
Alpha-mannosidase
NODE_878_length_314_cov_4.114650_17_382_- Klebsiella pneumoniae GH92
Short-chain dehydrogenase/reductase SDR
NODE_6075_length_277_cov_1.241877_1_345_- Novosphingobium panipatense GH92
Metallophosphoesterase
NODE_5945_length_252_cov_1.484127_1_320_+ Enterobacteriaceae bacterium DC416, Pantoea cypripedii GT1
Zeaxanthin glucosyltransferase
NODE_4367_length_123_cov_3.170732_1_191_+ Pseudomonas spp. GT2
Glucan biosynthesis glucosyltransferase H
NODE_6688_length_238_cov_1.373950_1_306_- Luteibacter spp. GT2
Sensor histidine kinase
NODE_429_length_307_cov_1.420195_1_375_- Sphingobium yanoikuyae GT2
Cellulose synthase catalytic subunit (UDP-forming)
NODE_8608_length_193_cov_1.663212_1_261_- Cupriavidus pauculus GT2
DNA-binding response regulator
NODE_8082_length_308_cov_1.019480_1_376_- Acidobacteria bacterium GT2
Cysteine-tRNA ligase
NODE_8019_length_166_cov_1.590361_1_234_- Bacillus sp. LK2 GT2
Non-ribosomal peptide synthetase
NODE_7554_length_274_cov_1.547445_1_342_- Pseudomonas spp. GT2
Non-ribosomal peptide synthetase
NODE_6340_length_262_cov_1.774809_1_330_- Acinetobacter baumannii GT2
DNA-binding response regulator
NODE_6666_length_155_cov_1.922581_1_223_- Pseudomonas spp. GT2
Diguanylate cyclase
NODE_4265_length_277_cov_1.346570_168_345_- Rhizobium sp. NT-26 GT20
Trehalose-6-phosphate synthase
NODE_1784_length_280_cov_1.378571_1_348_- Sphingomonas sp. MM-1 GT28
Undecaprenyl-diphosphomuramoyl pentapeptide beta-N-acetylglucosaminyltransferase
NODE_6862_length_207_cov_1.608696_1_275_- Phenylobacterium spp. GT28
Rod shape-determining protein-RodA
NODE_2164_length_148_cov_1.925676_1_216_- Azospirillum brasilense Sp245 GT4
UDP-galactopyranose mutase
NODE_3242_length_217_cov_1.447005_1_285_- Geobacter sp. M18 GT41
Glycosyltransferase
NODE_4396_length_252_cov_1.111111_17_320_- Pseudoxanthomonas spadix BD-a59 GT49
C4-dicarboxylate transport protein
NODE_8448_length_151_cov_1.350993_1_219_- Sphingobium yanoikuyae GT49
Dicarboxylate/amino acid:cation symporter
NODE_272_length_160_cov_1.768750_1_228_- Achromobacter spp. GT5
Histidine kinase
NODE_1519_length_282_cov_1.148936_1_350_+ Sphingobium spp. GT51
Penicillin-binding protein
NODE_7662_length_265_cov_1.418868_1_333_- Methylobacterium radiotolerans JCM 2831 GT51
Penicillin-binding protein 1A
NODE_5621_length_311_cov_1.035370_1_378_+ Sphingomonas spp. GT51
Penicillin-binding protein
NODE_2467_length_181_cov_1.049724_1_249_- Pseudomonas aeruginosa PAO1, Pseudomonas aeruginosa B136–33, Pseudomonas aeruginosa DK2, Pseudomonas aeruginosa UCBPP-PA14, Pseudomonas aeruginosa M18, Pseudomonas aeruginosa LESB58, Pseudomonas aeruginosa NCGM2.S1 GT51
Penicillin-binding protein 1B
NODE_6756_length_244_cov_1.627049_1_312_- Salinispora pacifica GT51
Penicillin-binding protein 1A
NODE_6722_length_178_cov_2.000000_1_246_+ Bacillus spp. GT51
Penicillin-binding protein
NODE_2550_length_228_cov_1.763158_1_296_- Terriglobus roseus DSM 18391 GT83
4-Amino-4-deoxy-L-arabinose transferase
NODE_742_length_196_cov_2.811224_1_264_- Caulobacter spp. GT83
Phospholipid carrier-dependent glycosyltransferase; 4-amino-4-deoxy-L-arabinose transferase
NODE_6274_length_182_cov_7.450550_1_250_- Pseudomonas spp. GT9
Bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
NODE_8074_length_252_cov_1.190476_143_320_- Rhodoplanes sp. Z2-YC6860 GT9
Lipopolysaccharide heptosyltransferase I