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Bulletin of the National Research Centre

Table 5 Frequencies of haplotypes containing pirin variants

From: A comprehensive in silico exploration of the impacts of missense variants on two different conformations of human pirin protein

SNP IDs

Haplotypesa

Haplotype frequencies

ALL

African

American

East Asian

European

South Asian

rs75378219_rs34104000_rs8094_rs35715407_rs34149789

C_A_C_C_C

0.5272

0.5902

0.4828

0.5314

0.4295

0.571

C_A_T_C_C

0.4286

0.2602

0.4847

0.4686

0.5705

0.429

C_G_C_C_C

0.0238

0.0788

0.021

–

–

–

T_A_C_C_C

0.0056

0.0189

0.0038

–

–

–

C_A_T_C_G

0.0045

0.016

0.0019

–

–

–

C_A_C_A_C

0.0029

0.011

–

–

–

–

T_A_T_C_C

0.0029

0.01

0.0019

–

–

–

C_A_C_C_G

0.0024

0.007

0.0038

–

–

–

C_G_T_C_C

0.0021

0.008

–

–

–

–

  1. aVariant DNA bases are written in bold letters, and haplotypes containing more than one variant are written in italics
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