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Table 6 Docking result between the selected ligands and pfLDH

From: In silico studies of 2,5-disubstituted furans as active antimalarial drug candidates

Interaction

Binding affinity (kcal/mol)

Hydrogen bond

Hydrophobic interaction

Ligand-receptor

Amino acid(bond length/Ã…)

Amino acid(bond type)

Chloroquine-pfLDH

− 6.1

ASP230(2.58)a, LEU201(2.80)a, MET199(3.45)b

PHE229(π → π)

1-pfLDH

− 6.3

THR97(3.06)a, THR97(3.43)b, PRO246(3.56)b

ALA236(R → R), PRO246(R → R), ILE31(π → R), VAL138( π→ R), PRO246(π → R), PRO250(π → R)

4-pfLDH

− 5.9

SER170(2.25)a, GLU256(3.59)b, GLU256(3.66)b

ILE239(R → R), ALA249(π → R), ARG171(π → R), ALA249(π → R)

5-pfLDH

− 5.7

THR97(2.25)a, VAL138(3.79)b, ASN140(3.75)b, VAL138(3.77)b, HIS195(3.62)b

ASP53(π → π), ILE31(π → R)

11-pfLDH

− 6.1

THR97(2.04)a, THR97(3.51)b, THR97(3.41)b, ASP53(3.63)b, THR97(3.53)b, GLY99(3.56)b

ILE31(π → σ), ALA236(R → R), LEU163(R → R), LEU167(R → R), PRO250(R → R), HIS195(π → R), HIS195(π → R), PRO246(π → R)

18-pfLDH

− 6.7

TYR247(2.16)a, VAL248(2.21)a

ILE239(π → σ), ARG171(R → R), ALA244(R → R), ILE239(R → R), TYR174(π → R), ILE239(π → R), PRO246(π → R), VAL248(π → R), ALA249(π → R)

19-pfLDH

− 6.7

ARG171(2.22)a, SER170(2.45)a, GLU256(3.55)b

ALA249(R → R), PRO184(π → R), ARG171(π → R), ALA249(π → R)

20-pfLDH

− 6.8

ARG185(2.53)a, SER170(2.53)a, SER170(2.30)a, PRO184(3.50)b

TYR174(π → R), TYR175(π → R), ARG171(π → R), ALA249(π → R)

21-pfLDH

− 6.0

ARG231(2.97)a, SER170(2.04)a

TYR174(π → π), TYR175(π → π), TYR175(π → R)

22-pfLDH

− 6.9

MET30(2.54), ILE31(2.02), THR97(2.53), GLY99(3.75)

ILE31(π → σ), ILE31(π → σ), ALA236(R → R), PRO246(R → R), PRO246(π → R)

  1. aConventional hydrogen bond
  2. bCarbon hydrogen bond (π → π) = pi-pi bond type, (R → R) = alkyl-alkyl bond type (π → R) = pi-alkyl bond type (π-σ) = pi-sigma bond type