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Bulletin of the National Research Centre

Table 2 The potential predicted 5′ and 3′ splice sites (GT-AG) in Buffalo CATH4 unspliced cDNA sequence

From: Intron retention in Cathelicidin-4 in river buffalo

Donor/acceptor splice site

Short sequence

FGA score

Donor (c.198+g.1)

5′ Intron 1

aggatGTgagtt

1.0048

Acceptor (c.199−g.1)

3′ Intron 1

tcaccAGgatgc

0.5185

(Donor (c.306+g.1)

5′ Intron 2

aagggGTgaggc

0.8146

Acceptor (c.307−g.1)

3′ Intron 2

cttccAGcgggt

0.7447

Donor (c.378+g.1)

5′ Intron 3

atgagGTgagtg

1.5098

  1. Exonic region is in small letter, and intronic region in capital letter. FGA score indicates the SplicePort computational score
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