Table 4 Basic barcode analysis of the two DNA markers and the combination of the two plastid DNA regions
From: Development of DNA-based species identification and barcoding of three important timbers
Loci | Aligned average sequence length (bp) | Homology (%) | Conserved | Variable | No. of SNPs | Percentage of SNP | CpG % |
|---|---|---|---|---|---|---|---|
T. grandis | |||||||
rbcL | 600 | 98 | 653 | 75 | 73 | 43.8 | 97 |
ITS-trnH | 415 | 97 | 314 | 93 | 115 | 15.58 | 85 |
D. latifolia | |||||||
rbcL | 541 | 99 | 608 | 85 | 105 | 37.52 | 68 |
ITS-trnH | 759 | 96 | 745 | 115 | 139 | 12.58 | 59 |
L. lanceolata | |||||||
rbcL | 620 | 100 | 60 | 56 | 43 | 30.25 | 91 |
ITS-trnH | 305 | 95 | 305 | 68 | 96 | 10.58 | 73 |