Table 4 Highly repeated epitopes from pMHCII binding

1

CRTFFLTQGALLNDK

EGKIVHISPLSGSAQ

ADTRILFIEEGKIVH

RTFFLTQGALLNDKH

2

DSSFSVRQDIVAITD

FLMQIAILATTVTLH

ATASFIYDGRLVDSI

SFKYGNGVWIGRTKS

3

ECRTFFLTQGALLND

GKIVHISPLSGSAQH

EEGKIVHISPLSGSA

4

FSFRYDNGVWIGRTK

GSVSLTIATVCFLMQ

EGKIVHISPLSGSAQ

5

FVIREPFISCSHLEC

KEGKIVHISPLSGSA

ETRVWWTSNSIVVFC

6

GDVFVIREPFISCSH

KIVHISPLSGSAQHI

GKIVHISPLSGSAQH

7

GFSFRYDNGVWIGRT

TRILFIKEGKIVHIS

GSVSLTIATVCFLMQ

8

GIKGFSFRYDNGVWI

INRCFYVELIRGRKQ

9

GQASYKILKIEKGKV

KIVHISPLSGSAQHV

10

IKGFSFRYDNGVWIG

KPQCQITGFAPFSKD

11

ISLILQIGNIISIWV

NRCFYVELIRGRKQE

12

KGDVFVIREPFISCS

QETRVWWTSNSIVVF

13

LECRTFFLTQGALLN

QKIITIGSVSLTIAT

14

NGIKGFSFRYDNGVW

RCFYVELIRGRKQET

15

NRPWVSFDQNLDYQI

RILFIEEGKIVHISP

16

NSRFESVAWSASACH

RVWWTSNSIVVFCGT

17

PWVSFDQNLDYQIGY

SKPQCQITGFAPFSK

18

PYNSRFESVAWSASA

TIATVCFLMQIAILV

19

QASYKILKIEKGKVT

TRILFIEEGKIVHIS

20

RTFFLTQGALLNDKH

TRVWWTSNSIVVFCG

21

SFRYDNGVWIGRTKS

22

SKGDVFVIREPFISC

23

SLILQIGNIISIWVS

24

SRFESVAWSASACHD

25

SYKILKIEKGKVTKS

26

YKILKIEKGKVTKSI

27

YNSRFESVAWSASAC